Phylogenetic analysis of the grouper family (Serranidae) from various local markets in Indonesian waters using COI (cytochrome oxidase I)
Keywords:
Phylogenetic, Serranidae, grouper fish, cytochrome oxidase I
Abstract
Grouper fish (Serranidae) is a type of fish found in Indonesian waters. However, not many people have conducted further research on phylogenetics based on COI (Cytochrome Oxidase I). This study aims to explain the phylogeny of grouper fish from the Serranidae family based on COI (Cytochrome Oxidase I). This research is a literature study. The research samples were grouper fish from Lombok, Karimunjawa, Lampung, Kendari, Madura, Tanakeke, and Numfor. The research instrument was a grouper-type observation sheet and an observation sheet for the results of the MEGA 7 application test. The data were analyzed using qualitative descriptive analysis. The results showed that the level of kinship between the species tested was very close, including Epinephelus areolatus, E. merra, E. fasciatus, E. longispinis, E. coioides, E. ongus, and E. coeruleopunctatus with all genetic distance averages type. 0.02. The conclusion of this study is that in general the species relationships found are several species found in the same location with similar morphology and diet.
References
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Maulid, D.Y., Nurilmala, M., Nurjanah, N., & Maduppa, H. (2016). Molecular Characteristics of Cytochrome B for Mackerel Barcodes. Jurnal Pengolahan Hasil Perikanan Indonesia, 19(1), 9-16. https://doi.org/10.17844/jphpi.2016.19.1.9
Monalisa, E., Mantiri, FR, & Lengkong, HJ (2019). Kajian Variasi Sekuens Interspesies dan Filogeni Kelelawar Pteropus Sp. Menggunakan Gen COI. Jurnal MIPA, 8(2), 71-77. https://doi.org/10.35799/jmuo.8.2.2019.24277
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Hariyanto, D.S.T., Mahardika, I.G.N.K., & Wandia, I.N. (2015). Keragaman Spesies Ikan Tuna di Pasar Ikan Kedonganan Balidengan Analisis Sekuen Kontrol Daerah Mitokondria DNA. Jurnal Veteriner, 16(3), 416–422. Retrieved from https://ojs.unud.ac.id/index.php/jvet/article/view/16257
Rahim, Z., & Madduppa, H. (2020). Identifikasi Ikan Sardin Komersial (Dussumieria Elopsoides) yang Didaratkan di Pasar Muara Angke, Jakarta Menggunakan Pengamatan Morfologi, Morfometrik dan DNA Barcoding. Jurnal Kelautan, 13(2), 93–99. https://doi.org/10.21107/jk.v13i2.6397
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Santosa, T.A., Sepriyani, E.M., Razak, A., Chatri, M., & Violita. (2021). Analisis E-Learning dalam Pembelajaran Evolusi Mahasiswa Pendidikan Biologi selama Pandemi Covid-19. Edumaspul: Jurnal Pendidikan, 5(1), 66–70. Retrieved from https://ummaspul.e-journal.id/maspuljr/article/view/1027
Setiawan, H., Fahrudin, A., & Kamal, M.M. (2019). Analisis Hubungan Panjang Berat pada Ikan Hermaphrodit: Kerapu Sunu (Plectropomus leopardus) dan Kerapu Macan (Epinephelus fuscoguttatus). Jurnal Biologi Tropis, 19(2), 124-130. https://doi.org/10.29303/jbt.v19i2.1162
Sulistyowati, B. I., Kamal, M., Yonvitner, & Yulianto, I. (2018). Penilaian Kelompok Ikan Kerapu dengan Pendekatan Pengelolaan Perikanan Berbasis Ekosistem di Taman Nasional Karimunjawa. Coastal and Ocean Journal, 2(1), 41–56. Retrieved from http://coj.pksplipb.or.id/index.php/coj/article/view/64
Wirdateti., Indriana, E., & Handayani. (2016). Analisis Sekuen DNA Mitokondria Cytochrome Oxidase I (COI) mtDNA pada Kukang Indonesia (Nycticebus spp) sebagai Penanda Guna Pengembangan Identifikasi Spesies. Jurnal Biologi Indonesia: Jurnal Penelitian dan Kajian yang Berkaitan dengan Masalah Biologi, 12(1), 119–128. Retrieved from https://e-journal.biologi.lipi.go.id/index.php/jurnal_biologi_indonesia/article/view/2322
Anafarida, O., & Badruzsaufari. (2020). Analisis Filogenetik Mangga (Mangifera spp.) Berdasarkan Gen 5,8S rRNA. ZIRAA’AH: Majalah Ilmiah Pertanian, 45(2016), 120–126. Retrieved from https://ojs.uniska-bjm.ac.id/index.php/ziraah/article/view/3001
Aqil, M., Indriyani, N., Abidin, L. O. B., & Megawati. (2019). Deteksi Megalocytivirus pada Ikan Kerapu Budidaya di Sulawesi Tenggara Menggunakan Metode Polymerase Chain Reaction Berdasarkan Gen Major Capsid Protein. Media Akuatika: Jurnal Ilmiah Jurusan Budidaya Perairan, 4(2), 61–67. Retrieved from http://ojs.uho.ac.id/index.php/JMA/article/view/7850
Ariyanti, Y., & Farajallah, A. (2019). Short Communication: Species Confirmation of Juvenile Cloudy Grouper, Epinephelus erythrurus (Valenciennes, 1828), Based on A Morphologic Analysis and Partial CO1 Gene Sequencing. BIODIVERSITAS, 20(3), 914-921. https://doi.org/10.13057/biodiv/d200341
Astuti, Rika, Yonvitner, & Kamal, M.M. (2016). Community Structure of Grouper Fish (Serranidae) Landed in Peukan Bada Subdistrict, Aceh Province. Jurnal Ilmu dan Teknologi Kelautan Tropis, 8(1), 73–84. Retrieved from https://journal.ipb.ac.id/index.php/jurnalikt/article/view/12497
Astuti, R. (2018). Kajian Stok Ikan Kerapu (Cephalopolis sonnerati) Berbasis Hubungan Panjang-Berat yang Didaratkan di Tempat Pendaratan Ikan Lhok Peukan Bada, Kabupaten Aceh Besar, Provinsi Aceh. Retrieved from https://www.semanticscholar.org/
Aznardi, S., & Madduppa, H. (2020). Identification of Grouper (Epinephelus Sp) at Muara Angke Traditional Fish Market in North Jakarta Using Morphology and DNA Barcoding Methods. Berkala Perikanan Terubuk, 48(1), 298–303. Retrieved from https://terubuk.ejournal.unri.ac.id/index.php/JT/article/view/7905
Bulanin, U., Masrizal., & Muchlisin, Z.A. (2017). Length-Weight Relationships and Condition Factors of The Whitespotted Grouper Epinephelus coeruleopunctatus Bloch, 1790 in The Coastal Waters of Padang City, Indonesia. Aceh Journal of Animal Science, 2(1), 23–27. https://doi.org/10.13170/ajas.2.1.6570
Huang, L., Qi, W., Zuo, Y., Alias, S.A., & Xu, W. (2020). The Immune Response of A Warm Water Fish Orange-Spotted Grouper (Epinephelus coioides) Infected with A Typical Cold Water Bacterial Pathogen Aeromonas Salmonicida is AhR Dependent. Developmental and Comparative Immunology, 113(July), 103779. https://doi.org/10.1016/j.dci.2020.103779
Imtiaz, A., Nor, S.A.M., & Naim, D.MD. (2017). Progress and Potential of DNA Barcoding for Species Identification of Fish Species. Biodiversitas Journal of Biological Diversity, 18(4), 1394–1405. https://doi.org/10.13057/biodiv/d180415
Jefri, E., Zamani, NP, Subhan, B., & Madduppa, HH (2015). Molecular Phylogeny Inferred from The Mitochondrial DNA of Grouper Epinephelus spp. in Indonesia It Is Collected from Local Fish Markets. Biodiversitas Journal of Biological Diversity, 16(2), 254–263. https://doi.org/10.13057/biodiv/d160221
Kamal, M.M., Hakim, A.A., Butet, N.A., Fitrianingsih, Y., & Astuti, R. (2019). Autentikasi Spesies Ikan Kerapu berdasarkan Marka Gen MT-COI dari Perairan Peukan Bada, Aceh. Jurnal Biologi Tropis, 19(2), 116 – 123. https://doi.org/10.29303/jbt.v19i2.1245
Lin, Y.J., Roa-Ureta, R.H., Rabaoui, L., Grandcourt, E.M., Maneja, R.H., Al-Abdulkader, K., & Qurban, M.A. (2019). Association to vegetated habitats and different vulnerability to habitat degradation for two fish species, Epinephelus areolatus (Serranidae) and Siganus canaliculatus (Siganidae), from the western Arabian Gulf. Marine Pollution Bulletin, 141(April), 482–492. https://doi.org/10.1016/j.marpolbul.2019.03.011
Malabarba, L.R., & Malabarba, M.C. (2020). Phylogeny and Classification of Neotropic Fish. ACADEMIC PRESS, 1-19. https://doi.org/10.1016/B978-0-12-815872-2.00001-4
Maulid, D.Y., Nurilmala, M., Nurjanah, N., & Maduppa, H. (2016). Molecular Characteristics of Cytochrome B for Mackerel Barcodes. Jurnal Pengolahan Hasil Perikanan Indonesia, 19(1), 9-16. https://doi.org/10.17844/jphpi.2016.19.1.9
Monalisa, E., Mantiri, FR, & Lengkong, HJ (2019). Kajian Variasi Sekuens Interspesies dan Filogeni Kelelawar Pteropus Sp. Menggunakan Gen COI. Jurnal MIPA, 8(2), 71-77. https://doi.org/10.35799/jmuo.8.2.2019.24277
Mujiyanto, & Syam, A., R. (2015). Karakteristik Habitat Ikan Kerapu di Kepulauan Karimun Jawa, Jawa Tengah. Jurnal BAWAL, 7(3), 147–154. http://dx.doi.org/10.15578/bawal.7.3.2015.147-154
Hariyanto, D.S.T., Mahardika, I.G.N.K., & Wandia, I.N. (2015). Keragaman Spesies Ikan Tuna di Pasar Ikan Kedonganan Balidengan Analisis Sekuen Kontrol Daerah Mitokondria DNA. Jurnal Veteriner, 16(3), 416–422. Retrieved from https://ojs.unud.ac.id/index.php/jvet/article/view/16257
Rahim, Z., & Madduppa, H. (2020). Identifikasi Ikan Sardin Komersial (Dussumieria Elopsoides) yang Didaratkan di Pasar Muara Angke, Jakarta Menggunakan Pengamatan Morfologi, Morfometrik dan DNA Barcoding. Jurnal Kelautan, 13(2), 93–99. https://doi.org/10.21107/jk.v13i2.6397
Ramadhani, A., Muchlisin, Z.A., Sarong, M.A., & Batubara, A.S. (2017). Hubungan Panjang Berat dan Faktor Kondisi Ikan Kerapu Famili Serranidae yang Tertangkap di Perairan Pulo Aceh Kabupaten Aceh Besar, Provinsi Aceh. Depik: Jurnal Ilmu Ilmu Perairan, Pesisir, dan Perikanan, 6(2), 112–121. https://doi.org/10.13170/depik.6.2.7017
Santosa, T.A., Sepriyani, E.M., Razak, A., Chatri, M., & Violita. (2021). Analisis E-Learning dalam Pembelajaran Evolusi Mahasiswa Pendidikan Biologi selama Pandemi Covid-19. Edumaspul: Jurnal Pendidikan, 5(1), 66–70. Retrieved from https://ummaspul.e-journal.id/maspuljr/article/view/1027
Setiawan, H., Fahrudin, A., & Kamal, M.M. (2019). Analisis Hubungan Panjang Berat pada Ikan Hermaphrodit: Kerapu Sunu (Plectropomus leopardus) dan Kerapu Macan (Epinephelus fuscoguttatus). Jurnal Biologi Tropis, 19(2), 124-130. https://doi.org/10.29303/jbt.v19i2.1162
Sulistyowati, B. I., Kamal, M., Yonvitner, & Yulianto, I. (2018). Penilaian Kelompok Ikan Kerapu dengan Pendekatan Pengelolaan Perikanan Berbasis Ekosistem di Taman Nasional Karimunjawa. Coastal and Ocean Journal, 2(1), 41–56. Retrieved from http://coj.pksplipb.or.id/index.php/coj/article/view/64
Wirdateti., Indriana, E., & Handayani. (2016). Analisis Sekuen DNA Mitokondria Cytochrome Oxidase I (COI) mtDNA pada Kukang Indonesia (Nycticebus spp) sebagai Penanda Guna Pengembangan Identifikasi Spesies. Jurnal Biologi Indonesia: Jurnal Penelitian dan Kajian yang Berkaitan dengan Masalah Biologi, 12(1), 119–128. Retrieved from https://e-journal.biologi.lipi.go.id/index.php/jurnal_biologi_indonesia/article/view/2322
Published
2021-05-24
How to Cite
Santosa, T., Fietri, W., Razak, A., & Sumarmin, R. (2021). Phylogenetic analysis of the grouper family (Serranidae) from various local markets in Indonesian waters using COI (cytochrome oxidase I). Edubiotik : Jurnal Pendidikan, Biologi Dan Terapan, 6(01), 74-82. https://doi.org/10.33503/ebio.v6i01.1204
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